• Skip to primary navigation
  • Skip to main content
  • Skip to primary sidebar
Get our Freezer Meal Quick Start Guide
freezer meal quick start guide

Get Our Freezer Meal Quick Start Guide

Loading

 

About
Free Resources
Contact

Instagram

Facebook

Pinterest

YouTube

TikTok

Thriving Home

Food & Lifestyle

  • Recipe Index
    • Course
      • Breakfast
      • Lunch & Dinner
      • Sides & Salads
      • Soups & Chilis
      • Appetizers
      • Snacks
      • Desserts
      • Baked Goods
      • Beverages
      • Condiments
    • Method
      • Freezer Meals
      • Stovetop
      • Oven
      • Slow Cooker
      • Instant Pot
      • Grill or Smoker
      • 6 Ingredients or Less
      • Air Fryer
    • Diet
      • Gluten-Free
      • Dairy-Free
      • Vegetarian
    • Ingredients
      • Chicken & Turkey
      • Beef
      • Pork
      • Seafood
      • Pasta & Pizza
    • Holiday
      • Birthday
      • Christmas
      • Easter
      • Halloween
      • Thanksgiving
      • Valentine's Day
    • All Recipes
  • Freezer Cooking
    • Start Here
    • Freezer Meal Recipes
    • 1 Hour Freezer Prep
    • Cookbooks
  • Menu Plans
  • Shop
    • Cookbooks
    • Our Recipe Ebooks & Digital Products
    • 1 Hour Freezer Prep
    • Shop Our Favorites
    • Gift Guides
Home Recipe Index Desserts Bars and Cookies

Whole Wheat Chocolate Chip Cookies

By: Rachel TiemeyerPosted: 8/12/25Updated: 8/12/25

This post may contain affiliate or sponsored links. Please read our disclosure policy.

5 from 1 vote
Jump to Recipe Rate this Recipe

Yes, perfect Whole Wheat Chocolate Chip Cookies do exist! These cookies are made with healthier, real food ingredients but turn out soft and delicious. Husband and kid approved.

A stack of chocolate chip cookies on a plate. this …


 
Table of Contents
  • Why You’ll Love this Recipe
  • Polly’s Testing Tips
  • Ingredients
  • Why Is White Whole Wheat Flour So Important?
  • How to Make Whole Wheat Chocolate Chip Cookies
  • How to Freeze
  • Recipe FAQs
  • Recipe: Whole Wheat Chocolate Chip Cookies

Why You’ll Love this Recipe

  • The Taste – Despite being made with White Whole Wheat Flour, the flavor is amazing.
  • The Texture – These have the perfect balance of crispy on the outside and moist on the inside.
  • Simple Ingredients – These come together fast with ingredients you likely have in your pantry.
polly

Polly’s Testing Tips

  • I like to error on the side of making these cookies bigger vs. smaller.
  • You can easily double the batch and freeze the extra cookie dough. A great time saver!
  • No need for a stand mixer. You can prep these without any big kitchen tools.

Ingredients

Check out the ingredients you will need.

Whole wheat chocolate chip cookie ingredients measured out and labeled.

Ingredient Notes

  • White whole wheat flour – This wheat variety is very important. More on that below.
  • Unsalted butter – It’s important to let the butter cool after melting it.
  • Vanilla extract – Try making your own Homemade Vanilla Extract.
Stock photo of a bag of Prairie Gold white whole wheat flour.

Why Is White Whole Wheat Flour So Important?

If you spend much time browsing through our baked goods, you’ll find that we almost always use white whole wheat flour (instead of just “whole wheat flour”). We’ve found that white whole wheat flour yields much fluffier/lighter-tasting results. It works in most recipes as a replacement for whole wheat flour. Here is a bit more about the difference between the two.

How to Make Whole Wheat Chocolate Chip Cookies

Here is a quick overview of how to make this recipe.

Cookie dough being mixed with a whisk.
Chocolate chip cookie dough in a glass mixing bowl.
Balls of chocolate chip cookie dough on a parchment-lined baking sheet.
Chocolate chip cookies straight from the oven on a baking sheet.

How to Freeze

Freeze for Later: Scoop or shape the dough, place on a baking sheet to flash freeze, then transfer to an airtight container or freezer bag. Freeze for up to 3 months. Or you can freeze baked cookies (remove as much air as possible) for up to 3 months.

Make from Frozen: Bake straight from frozen—just add 1–2 minutes to the baking time.

Whole wheat chocolate chip cookies on a baking rack.

Recipe FAQs

What is the best way to store cookies?

Cookies are often best stored at room temperature in an airtight container. Use layers of parchment paper if you need to layer the cookies.

Can I make the dough in advance?

Yes, you can make the dough in advance and refrigerate for up to 3 days or freeze it for up to 3 months.

What if I don’t have white whole wheat flour?

If you can’t find that specific kind of flour, use half whole wheat and half unbleached, all-purpose flour instead.

Chocolate chip cookies on a plate with one split in half.

Whole Wheat Chocolate Chip Cookies

These are the BEST EVER soft batch, whole wheat cookies. They include all real food ingredients but retain the flavor and texture of the classic version.
5 from 1 vote
Yield: 24 small cookies
Prep Time:20 minutes mins
Cook Time:15 minutes mins
Total Time:35 minutes mins
Print Pin Rate Email

Ingredients
 

  • 2 cups white whole wheat flour (this wheat variety is very important!)
  • 1/2 teaspoon baking soda
  • 1/2 teaspoon salt
  • 3/4 cup unsalted butter (melted and cooled until just warm)
  • 3/4 cup packed brown sugar
  • 1/2 cup sugar
  • 1 large egg
  • 1 large egg yolk
  • 2 teaspoons vanilla extract
  • 1 1/2 cups semisweet chocolate chips
Prevent your screen from going dark

Instructions
 

  1. Preheat to 325°F. Line two large baking sheets with parchment paper or cooking spray.
  2. In a mixing bowl, whisk together the flour, baking soda, and salt.
  3. In a separate bowl, whisk together the butter and sugars until thoroughly blended. Beat in the egg, egg yolk, and vanilla until combined.
  4. Add dry ingredients into the wet ingredients and stir until combined. Stir in the chocolate chips.
  5. Scoop a heaping tablespoon per cookie and roll in a ball. Place dough balls on lined sheet pan, spacing them out so they won’t touch when baked.
  6. Bake until the cookies are light golden brown, the outer edges start to harden, and the middle is still soft and puffy, about 15 minutes or so. Note: If baking two sheet pans of cookies at a time, be sure to rotate top and bottom and turn them front to back halfway through the cooking time.
  7. Let cookies cool slightly on the pan and then transfer to a cooling rack using a metal spatula.

Freezer Instructions

Freeze for Later: Scoop or shape the dough, place on a baking sheet to flash freeze, then transfer to an airtight container or freezer bag. Freeze for up to 3 months. Or you can freeze baked cookies (remove as much air as possible) for up to 3 months.
Make from Frozen: Bake straight from frozen—just add 1–2 minutes to the baking time.

Notes/Tips

  • Yes, you can make the dough in advance and refrigerate for up to 3 days or freeze it for up to 3 months.
  • Cookies are often best stored at room temperature in an airtight container. Use layers of parchment paper if you need to layer the cookies.

Nutrition

Serving: 1 cookie | Calories: 208 kcal (10%) | Carbohydrates: 27 g (9%) | Protein: 3 g (6%) | Fat: 11 g (17%) | Cholesterol: 31 mg (10%) | Sodium: 79 mg (3%) | Fiber: 2 g (8%) | Sugar: 17 g (19%)
If you make this, please leave a review and rating letting us know how you liked this recipe!
Author: Rachel Tiemeyer

84 shares
  • Share
  • Email

Rachel Tiemeyer

As co-founder of Thriving Home, Rachel dreams about creating recipes (literally) and uses her husband, her 3 kids, and even the neighbors as guinea pigs several nights a week. She believes that good food has the power to bring families and friends closer together and continues to wake up excited about her job each day, even after 10+ years!

Read more...

Reader Interactions

5 from 1 vote

Leave a Comment Cancel reply

Have a question? Submit your question or comment below.

Recipe Rating




This site uses Akismet to reduce spam. Learn how your comment data is processed.

  1. Adelyn says

    Posted on 2/14/23 at 12:16 pm

    Loved these! Made a much of dough for the freezer too.

    Reply

sidebar

polly and rachel

Welcome

We’re moms, cookbook authors, and freezer cooking evangelists. Our mission is to help your home thrive, one delicious meal at a time. Let’s make the most of your time in the kitchen! Read more.

Follow Us On Instagram!

freezer cooking

Order On:

Amazon • Target

Learn More

freezer to table

Order On:

Amazon • Target

Learn More

FREEZER MEALS

grilled chicken cutlets on a gas grill.

Southwest Chicken

Taco bar with all the toppings lined up

Totally Tasty Taco Bar

Tomato bisque in bowls with spoons and croutons on top.

Tomato Bisque

Chicken taco soup in a white bowl with toppings.

Chicken Taco Soup

TOP RECIPES

Chicken Parmesan casserole in a glass baking dish with a spoon.

Chicken Parmesan Casserole

Meatball subs that have been under the broiler, side by side.

Easy Meatball Subs

Tomato bisque in bowls with spoons and croutons on top.

Tomato Bisque

Seasoned cooked steak sliced on a plate with steamed broccoli and a baked potato.

The Perfect Pan-Seared Steak

Popular Round-Ups

Fully cooked ham and egg cups in a freezer bag.

20+ Make Ahead Breakfast Ideas

Collage image for freezer meals.

Easy Freezer Meals for One or Two

20+ Inexpensive, Easy Meals for Large Groups

Collage of 7 different marinades with chicken breasts on the left and cooked dishes on the right.

7 BEST Chicken Marinades

freezer meal update
New to freezer cooking?

Grab Our Freezer Meal Quick Start Guide!

5 days of recipes & tips from freezer meal experts.

Loading

Instagram

Facebook

Pinterest

YouTube

TikTok

About
About Us
Work With Us
Press
Recipes
All Recipes
Freezer Meals
Menu Plans
Shop
Cookbooks
1 Hour Prep Sessions
Gift Guides
Explore
Free Resources
Shop Our Favorites
Facebook Group
Privacy Policy
Accessibility
Disclaimers
Contact
© 2025 Thriving Home
Site Credits
Designed by Melissa Rose Design Developed by Once Coupled
Back to Top
84 shares

Rate This Recipe

Your vote:




A rating is required
A name is required
An email is required

Recipe Ratings without Comment

Something went wrong. Please try again.